kisSnp Tool name | kisSnp |
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URL | http://alcovna.genouest.org/kissnp-page/ |
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Important features | 1. A tool which compares 2 sets of short reads from next generation technology and finding SNP between them.
2. The 2 sets of reads are from 2 individuals of same or related species. |
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Citations | P.Peterlongo, N.Schnel, N.Pisanti, M.-F. Sagot, V.Lacroix: Identifying SNPs without a reference genome by comparing raw reads. Proceedings of String Processing and Information Retrieval (SPIRE) 2010, Springer LNCS. |
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Year of publication | 2010 |
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Rank by usage frequency | 100 |
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Comments | |
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Function | SNP discovery, Indel discovery |
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Category | Free, Downloadable |
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License | CeCILL |
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Status | |
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Input file format | .fna |
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Output file format | |
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Operating system | Linux |
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Operating language | C |
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Platform | Illumina, 454 |
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Downloadable file format | |
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Submission file format | |
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